nf-core / modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
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Repository to host tool-specific module files for the Nextflow DSL2 community!
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
k-mer similarity analysis pipeline
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
Please consider using/contributing to https://github.com/nf-core/sarek
De novo assembly pipeline for 10X linked-reads using Supernova